Hmmm. Shouldn't need to install caps between collector and base. And I don't see how that would help. It's caused by the inductor picking up a strong radio signal nearby. I've had a wah do it before but was just for a second. Read this:
http://www.jimdunlop.com/index.php?page=support/faq_gcb_radioWith the mid-range mod you could try a 1.8K or so. I've modded a wah with a .068uf value on a rotary but never had a bass guitar & amp to test it. I just added it to fill an empty position on the switch.
How did the .05uf work out for you? Strong wah effect from heel to toe or kinda weak? Being that the list of mods are geared towards electric guitar they may not interact as well with bass.